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Bio-Software Engine Analysis for High Concentration Regions (HCR) Detection of a Fixed Base String on an Affected Sequence

Syed Mahamud Hossein , A. K. Bandyopadhyay, Published in Artificial Intelligence

International Journal of Applied Information Systems
Year of Publication: 2013
© 2012 by IJAIS Journal
10.5120/ijais12-450726
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  1. Syed Mahamud Hossein and A K Bandyopadhyay. Article: Bio-Software Engine Analysis for High Concentration Regions (HCR) Detection of a Fixed Base String on an Affected Sequence. International Journal of Applied Information Systems 5(2):61-68, January 2013. BibTeX

    @article{key:article,
    	author = "Syed Mahamud Hossein and A. K. Bandyopadhyay",
    	title = "Article: Bio-Software Engine Analysis for High Concentration Regions (HCR) Detection of a Fixed Base String on an Affected Sequence",
    	journal = "International Journal of Applied Information Systems",
    	year = 2013,
    	volume = 5,
    	number = 2,
    	pages = "61-68",
    	month = "January",
    	note = "Published by Foundation of Computer Science, New York, USA"
    }
    

Abstract

A program to enable optimal alignments searching between two sequences, the host sequence (normal plant) and query sequence (Virus). Looking for homologues has become a routine operation of biological sequences in 4X4 combination with different subsequence (word size). The program takes advantage of the high degree of homology between such sequences to construct an alignment of the matching regions. The main aim is to detect the overlapping reading frames. This program also enable to find out the highly infected colones selection highest matching region with minimum gap or mismatch zones and unique virus colones matches. This is a small, portable, interactive, front-end program intended to be used to find out the regions of matching between host sequence and query subsequences. All the operations are carried out in fraction of seconds, depending on the required task and on the sequence length.

Reference

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Keywords

Homology searching, HCRD, FBS