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Bio-Software Engine Analysis for High Concentration Regions (HCR) Detection of a Fixed Base String on an Affected Sequence

by Syed Mahamud Hossein, A. K. Bandyopadhyay
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International Journal of Applied Information Systems
Foundation of Computer Science (FCS), NY, USA
Volume 5 - Number 2
Year of Publication: 2013
Authors: Syed Mahamud Hossein, A. K. Bandyopadhyay
10.5120/ijais12-450726

Syed Mahamud Hossein, A. K. Bandyopadhyay . Bio-Software Engine Analysis for High Concentration Regions (HCR) Detection of a Fixed Base String on an Affected Sequence. International Journal of Applied Information Systems. 5, 2 ( January 2013), 61-68. DOI=10.5120/ijais12-450726

@article{ 10.5120/ijais12-450726,
author = { Syed Mahamud Hossein, A. K. Bandyopadhyay },
title = { Bio-Software Engine Analysis for High Concentration Regions (HCR) Detection of a Fixed Base String on an Affected Sequence },
journal = { International Journal of Applied Information Systems },
issue_date = { January 2013 },
volume = { 5 },
number = { 2 },
month = { January },
year = { 2013 },
issn = { 2249-0868 },
pages = { 61-68 },
numpages = {9},
url = { https://www.ijais.org/archives/volume5/number2/422-0726/ },
doi = { 10.5120/ijais12-450726 },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Journal Article
%1 2023-07-05T16:00:57.916590+05:30
%A Syed Mahamud Hossein
%A A. K. Bandyopadhyay
%T Bio-Software Engine Analysis for High Concentration Regions (HCR) Detection of a Fixed Base String on an Affected Sequence
%J International Journal of Applied Information Systems
%@ 2249-0868
%V 5
%N 2
%P 61-68
%D 2013
%I Foundation of Computer Science (FCS), NY, USA
Abstract

A program to enable optimal alignments searching between two sequences, the host sequence (normal plant) and query sequence (Virus). Looking for homologues has become a routine operation of biological sequences in 4X4 combination with different subsequence (word size). The program takes advantage of the high degree of homology between such sequences to construct an alignment of the matching regions. The main aim is to detect the overlapping reading frames. This program also enable to find out the highly infected colones selection highest matching region with minimum gap or mismatch zones and unique virus colones matches. This is a small, portable, interactive, front-end program intended to be used to find out the regions of matching between host sequence and query subsequences. All the operations are carried out in fraction of seconds, depending on the required task and on the sequence length.

References
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Index Terms

Computer Science
Information Sciences

Keywords

Homology searching HCRD FBS

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